courses:ast100:5
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| courses:ast100:5 [2025/08/16 09:48] – [5. Ways of Searching for Life] asad | courses:ast100:5 [2026/01/12 03:23] (current) – asad | ||
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| ====== 5. Chemical Age ====== | ====== 5. Chemical Age ====== | ||
| - | **Juno:** Our boat is now moving from the Brahmaputra into the Jamuna, this is just the right time to start talking about the Chemical Age, because through Krishna of Mathura and the Taj Mahal of Agra the Jamuna has a profound symbolic connection with life. But to begin this age we need to brush up a little on Earth’s 4.5-billion-year history, because the first 4.0 billion years of it will be our terrestrial Chemical Age. | ||
| - | **Socrates: | ||
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| - | **Juno:** Since we know the history of complex chemistry on only one planet, it is logical in this age to think about Earth. But at the end of the discussion we will also talk about ways of searching for complex molecules and life on other planets, inside or outside the Solar System. In fact, our plan here is quite similar to that of the Planetary Age. In the Planetary Age Hermes mainly focused on the Solar System, but in the end he also spoke about the discovery of planets around other stars. | ||
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| - | **Socrates: | ||
| ===== - Seas and Atmosphere ===== | ===== - Seas and Atmosphere ===== | ||
| - | **Juno:** About 4.5 billion years ago Earth was born. For the first 500 million years the surface was very hot and full of volcanoes, and it spun very fast on its own axis, taking only 12 hours for one rotation. On top of that, many leftover pieces of rock and comets from the construction of the inner four planets kept crashing onto Earth from space during the Late Heavy Bombardment. This period is called the Hadean Eon. Some intact zircon (ZrSiO$_4$) crystals from that time have been found, from which we understand that oceans already existed then. | ||
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| - | **Socrates: | ||
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| - | **Juno:** Through volcanoes and all the cracks in the crust, water vapor rose from inside Earth into the atmosphere, this process is called outgassing. After Earth cooled, this vapor formed clouds, and clouds produced rain. One reason for the oceans is this rain. But a large part of ocean water probably also came through asteroids and comets during the bombardment. At that time the whole Earth was probably surrounded by ocean, with no large continents. Scattered across the ocean were volcanic islands, the peaks of various volcanoes. There was oxygen in vapor and water, and oxygen in zircon, but there was no free molecular oxygen (O$_2$) in the atmosphere at all. | ||
| - | **Socrates: | ||
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| - | **Juno:** I am showing not only the increase of oxygen in the air, but also important changes in the chemical composition of the oceans. After the Hadean, the Archean Eon began 4.0 billion years ago. But Earth’s crust began to stabilize around 3.8 billion years ago, when the precursors of today’s continents, various microcontinents, | ||
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| - | **Socrates: | ||
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| - | **Juno:** Yes, you can take it that way. At present oxygen makes up about 21% of the atmosphere, and it began to rise from zero around 3.2 billion years ago, where the dashed line starts. The earliest photosynthesis was not oxygenic, meaning it did not produce oxygen. At that time bacteria mixed oxygen with iron and water to form iron compounds on the ocean floor. Oxygenic photosynthesis began properly around 3.0 billion years ago. At the same time microcontinents were joining to form various continents. The newly produced oxygen reacted with iron on the seafloor, filling the oceans with iron. In the figure this is what is meant by “Iron Ocean.” | ||
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| - | **Socrates: | ||
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| - | **Juno:** Yes, iron was one reason. Another reason may have been microbes in the ocean that lived by metabolizing oxygen. Only after the amount of oxidizable iron in the ocean decreased did the oxygen produced by cyanobacteria start mixing into the air, and in a very short time oxygen in the atmosphere rose to nearly 1%. Because of this oxygen, sulfur was oxidized and began to mix into the ocean, giving us the “Sulfide Ocean.” How oxygen rose from 1% to 20% is a subject for the Biological Age, not now. | ||
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| - | **Socrates: | ||
| ===== - Periodic Table ===== | ===== - Periodic Table ===== | ||
| - | **Juno:** Before understanding where they came from, we need to look once at the periodic table. The pier you see on the left is actually in Shakhahati Char, in the middle of the Jamuna. If we dock the boat at that ghat we will see a marvelous seven-story building that has been built in the form of the periodic table. | ||
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| - | **Socrates: | ||
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| - | **Juno:** Now you can all see it, the seven-story building faces the Jamuna, and each floor has 18 rooms. The top floor is number 1, and the very bottom one is number 7. From room number 3 on the bottom two floors, a two-story pier extends out toward the river. This pier is where the boat can be docked. | ||
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| - | [The boat docks. Socrates and the other seven admire the building while still sitting in the boat.] | ||
| - | **Ishtar:** Then by showing us the building, explain the beauty of the periodic table. | ||
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| - | **Juno:** Each floor is a period (row) of the periodic table, and each room is a group (column). Since there are 7 periods, there are 18 groups. The columns can again be divided into four blocks: s, p, d, f. The first two columns make the s-block. In this block hydrogen is a nonmetal, besides that the first column are alkali metals (red), and the second column are alkaline earth metals (purple). Helium in the last column is also placed in the s-block. Except helium, everyone in columns 13 to 18 are in the p-block. Among them are metalloids, post-transition metals (green), halogens, nonmetals (yellow) and noble gases (brown). A few of these nonmetals are very important for life, especially carbon (C), nitrogen (N), oxygen (O), phosphorus (P), and sulfur (S), abbreviated as CHNOPS. Columns 3 to 12 form the d-block, everyone here is a transition metal (blue). And the pier where we have docked, all the elements here belong to the f-block (cyan), on the bottom floor the actinides (beginning with Ac), and on the floor above them the lanthanides (beginning with La); many of them are radioactive. | ||
| - | **Socrates: | ||
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| - | **Juno:** Because until now a total of 118 basic atoms have been discovered. Hydrogen’s atomic number is 1, oganesson’s is 118. In the nucleus at the center of an atom there are protons and neutrons, and around them are electrons. The number of protons in the nucleus is the atomic number. If there are as many electrons as protons, the atom is neutral; if there are more or fewer electrons than protons, ions are obtained: more means negative ion (since electrons are negative), fewer means positive ion. But the property of an atom is determined by the number of protons. | ||
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| - | **Socrates: | ||
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| - | **Juno:** You will understand with an example. Gold (Au, from the Latin Aurum) has 79 protons, and gold is such a solid that even at 1000 degrees Celsius it remains hard, to melt it requires 1064° Celsius. But by adding just one proton to it we get mercury (Hg), which melts and becomes liquid already at −40° Celsius, which is why at room temperature mercury is liquid inside a thermometer. That means just one proton can change the property of an atom so drastically. | ||
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| - | **Socrates: | ||
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| - | **Juno:** You should cut down your annoying comedy, Socrates. | ||
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| - | **Socrates: | ||
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| - | **Juno:** Uranium’s nucleus has 92 protons, plutonium heavier than that has 94. Heavier than this are not found naturally in nature, scientists synthesized them artificially in the lab. In making Moscovium, Moscow’s scientists had the greatest contribution, | ||
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| - | **Socrates: | ||
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| - | **Juno:** To understand that we need to go back to the story of the Particle Age. We heard from Ravi that if you bring two particles with the same charge very close, then stronger than their electromagnetic repulsion becomes the attraction of the strong force. That is why so many protons with positive charge can stay together in a nucleus. But if there are more than 94 protons, the nucleus cannot remain stable. That is why they are not in nature, they have to be made in the lab. | ||
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| - | **Socrates: | ||
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| - | **Juno:** That is what is shown in this diagram, through a star 500 times bigger than the Sun. A few elements heavier than helium were produced in very small amounts right after the Big Bang, but almost all the elements of the periodic table were born inside stars. The first generation of stars were much more massive than the Sun, which is why they were able to produce many heavy elements. How that happens we heard in the Stellar Age. | ||
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| - | **Socrates: | ||
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| - | **Juno:** Then look again at the diagram above. You will see that in the final stage of life the core of a massive star looks like an onion, meaning it has many layers. At the very center is iron, outside it are several shells: first shell silicon, then successively magnesium, neon, oxygen, carbon, helium, and hydrogen shells. The star has built these shells of elements throughout its life. Let us hear again how. After all the hydrogen in the core has been converted into helium, nuclear fusion stops, and without outward pressure gravity compresses and heats the star. Then at one point the helium at the core’s center produces carbon, while outside remains a shell of helium. After all the helium in the core turns into carbon, fusion again stops, and as before the star compresses and heats up. As a result carbon in the core produces oxygen, outside remains a shell of carbon, and outside that still the previous helium shell. In this way, through the interplay of fusion and gravity, one layer after another is born. The heaviest element is at the center, the further out we go the lighter the elements we find. | ||
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| - | **Socrates: | ||
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| - | **Juno:** It is showing how long each reaction continues in the womb of the star, and along with that the temperature required for each fusion reaction is shown in megakelvin and gigakelvin units. Hydrogen fusion that happens at 5 megakelvin lasts for 7 million years. But silicon fusion that happens at 2.5 gigakelvin takes place within just 1 day. That means the iron core of a massive star is made in just one day, this day can be called the last day of its life. | ||
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| - | **Socrates: | ||
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| - | **Juno:** In the Stellar Age we heard that at death such massive stars explode as supernovae. At death through one enormous explosion the star gives us all the other elements as a gift. This is the star’s last donation to the universe. Let me explain how. Elements heavier than iron cannot be formed through normal fusion, because to make them requires investing more energy than is returned after they are made. Nature does not allow such losing reactions to happen. But during a supernova explosion suddenly such a vast amount of energy is released inside the star that it can be invested in reactions to make heavier elements. At the moment of explosion within only a few seconds many elements heavier than iron are born. But besides supernovae there are also some slower processes through which heavy elements can be made. We will not go into that detail. | ||
| ===== - Life on Earth ===== | ===== - Life on Earth ===== | ||
| - | **Socrates: | ||
| - | **Juno:** That you can already understand. After an explosion a star spreads all the elements inside it into the interstellar medium. The interstellar cloud from which our solar system was born already contained many elements because of the explosions and deaths of many neighboring stars. Since Earth was born from such a metal-rich cloud, it can be said that from the beginning it inherited all the elements. | ||
| - | **Socrates: | ||
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| - | **Juno:** Scientists do not yet know the whole process. But the most interesting hypothesis is shown in the diagram above. On the far left is a hydrothermal vent on the ocean floor. Scientists think that in such seafloor vents life first arose about 3.5 billion years ago. At that time the oceans were acidic, with a pH level of 6. Inside the ocean floor vents were alkaline or basic fluids, with a pH level of 11. In the acidic ocean there were positive hydrogen ions (H$^+$), meaning protons. In the alkaline vent there were negative hydroxyl ions (OH$^-$). Between the ocean and the vent there was a wall of iron–nickel sulfide, Fe(Ni)S, which created many microscopic chambers inside the wall. In these chambers, through the flow of protons coming down from the ocean water, from inert hydrogen and carbon dioxide the organic ion formate was created, with the formula HCOO$^-$. In this way, though not life, at least the organic was born from the inorganic. | ||
| - | **Socrates: | ||
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| - | **Juno:** Of course not. Formate is just one example. On the right side of the vent in the diagram the arrows above and below show the next steps. The first appearance of life actually took place through primitive metabolism, which is seen in the large cycle at the top. | ||
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| - | **Socrates: | ||
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| - | **Juno:** I had wanted to explain, but after hearing your silly sarcasm the desire is gone. Ask your AI what metabolism is, not me. Let us return to the picture of proto-metabolism. You see a well-like structure resembling a cell, through whose wall protons (H$^+$) could enter, because the ocean outside the wall was positive and the inside was negative. With the flow of protons like a battery, possibly a primitive Krebs cycle was running inside this well, the biochemical cycle through which life obtains nutrients, meaning gathers energy from nutrients. Here the nutrients, meaning the inputs, were mainly hydrogen, hydroxyl, and carbon dioxide. And the outputs were four kinds of biomolecules most essential for life: lipids, sugars, amino acids, nucleotides. Life makes its cell walls from lipids, gets energy from sugars, makes proteins from amino acids, and makes RNA and DNA, that is, the genetic code, from nucleotides. | ||
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| - | **Socrates: | ||
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| - | **Juno:** Yes. Probably first protocells were made with walls of lipids, which floated in the stream of geochemical energy inside the vents. Inside these cells the very first thing needed is an information-processing system, or self-information. Without information the formation of life is not possible, it is not possible for thousands of bodies to replicate from one body. From nucleotides the first information system to arise was ribonucleic acid (RNA). The work of copy-paste was first begun by RNA. But the system became stronger when deoxyribonucleic acid (DNA) began to be produced. The work of coding information was taken over by DNA, RNA got the role of messenger. According to the code of DNA, various molecular machines, ribosomes and proteins, began to be made. With these the first living cell was formed. The first cells were not like human cells. Our eukaryotic cells are basically round, the primitive prokaryotic cells were elongated, and they did not have a nucleus. Thread-like DNA (shown in blue) floated in the fluid of the cell, not coiled in the center like our chromosomes. | ||
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| - | **Socrates: | ||
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| - | **Juno:** If you can once write down the perfect instructions for making something as a code, then with that code you can make that thing as many times as you wish, if the raw material is there. It was about 3.5 billion years ago that Earth first understood this on the chemical and biological scale. The alphabet in which computer code is written has only two letters, 0 and 1. With only these two letters an infinite number of “words” of different lengths can be made. In the cells of life the code is written with a four-letter alphabet, the four letters are the English A T C G. | ||
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| - | **Socrates: | ||
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| - | **Juno:** A T C G are four nucleotide bases arranged one after another between the two helices of DNA, called nitrogenous bases because they are made with nitrogen. The diagram shows the DNA of our body. At the very top you see the two twisted helices. A base of one helix is bonded with a base of the other helix, two bases from the two helices together form a base pair (bp). Much like a spiral staircase: if the two railings of the staircase are the two helices, then the steps are the bases attached to the helices. On the left side you can see more clearly, the ribbon of the helix is made with phosphate and sugar, and inside them are set the bases. Bonds of A with T and C with G are shown. The structures of the ATCG bases are also given at the bottom left, you can see many carbons, nitrogens, oxygens, hydrogens. Three consecutive base pairs together form a codon, or triplet. Codons that come together to make a specific protein can be called a gene. From here the concept of the genetic code came. | ||
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| - | **Socrates: | ||
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| - | **Juno:** Yes, it is showing the packaging of DNA inside the cell. DNA base pairs (bp) of 2 nanometers (nm) in size are wound around histone proteins. 200 bp wrapped around a histone together make an 11 nm nucleosome, which in turn coils again into a 30 nm solenoid, each turn of which contains 6–8 nucleosomes. Many solenoid fibers together form 300 nm chromatin, which condenses into even thicker chromatids, 840 nm in diameter. Two chromatids joined with a bridge in the middle make one chromosome. Inside the nucleus of our cells there are 46 such chromosomes. | ||
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| - | **Socrates: | ||
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| - | **Juno:** In reality the tangle is even greater, I just simplified it. | ||
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| - | **Socrates: | ||
| ===== - Habitable Zone ===== | ===== - Habitable Zone ===== | ||
| - | **Mars:** Before that, we should set sail. We’ve seen enough of the periodic table. Just ahead the Teesta River meets the Jamuna. | ||
| - | [From Shakhahati Ghat the boat departs; the eight arrive at the confluence of the Teesta and Jamuna.] | ||
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| - | **Socrates: | ||
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| - | **Riya:** Yes, exactly 200 years before my birth, in 1787, a massive flood caused the Teesta to break into the Brahmaputra. From then on the Brahmaputra began its avulsion, shifting westward from its old eastern course. Over nearly fifty years it finally established the Jamuna as its main channel, while the old channel came to be called the Old Brahmaputra. On its banks the city of Mymensingh later built its park and the Zainul Abedin Museum. | ||
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| - | **Juno:** Looking from the boat at the vastness of the Teesta-Jamuna confluence, one truly feels why the Ganga-Brahmaputra Delta is called the most fertile place on Earth. For many thousands of years this region has been one of the most densely populated areas in the world. | ||
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| - | **Juno:** To understand that, first we must understand the concept of the habitable zone. Since galaxies, stars, and planets are all made of the same chemical elements, it can be assumed that life may emerge on many planets the same way it did on Earth. For life on Earth what was needed was oceans of liquid water. So, if a planet has oceans of liquid water, it may be habitable. In the diagram above you see the region around a star where, if a planet orbits, liquid water could exist on its surface—that region is called the habitable zone. Outside this zone, if a planet is closer to its star it will be so hot that water evaporates, and if farther away, the cold will freeze water into ice. Only inside the habitable zone does temperature remain between 0 and 100 degrees Celsius so that water stays liquid on the surface. However, for life the most favorable range is between 0 and 50 degrees. | ||
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| - | **Socrates: | ||
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| - | **Juno:** Just as in winter when the fire in your yard is weaker you need to sit closer to it for comfort, so too when a star’s temperature is lower, a planet must be closer to stay within 0–50 degrees Celsius. For a G-type star like the Sun, the habitable zone lies between 0.9 and 1.6 astronomical units (AU). The diagram shows that compared with G-types, M and K stars have two disadvantages: | ||
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| - | **Socrates: | ||
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| - | **Juno:** Possibly. It is also worth noting that our Mars was once within the habitable zone. About two billion years ago Mars had rivers and seas of liquid water on its surface, traces of which still remain. But whether life existed on Mars at that time is not yet known. | ||
| - | **Socrates: | ||
| {{https:// | {{https:// | ||
| - | **Juno:** Out of about 6,000 planets discovered so far, 70 have been found within their star’s habitable zone. Among these, about 40 planets resemble Earth most closely, and their names are shown in this figure. On the X-axis is the intensity of starlight on the planet’s surface relative to Earth, in percentage. Light intensity is directly related to the distance of the planet from its star. On the Y-axis is the star’s temperature relative to the Sun. | ||
| - | **Socrates: | ||
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| - | **Juno:** From a star’s brightness and distance its temperature can be calculated, and from the temperature the habitable zone can be determined. When exoplanets are discovered using the transit method, the planet’s distance from the star is also known, because its orbital period depends on that distance. Once you know the distance, you can tell whether the planet is in the habitable zone. | ||
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| - | **Socrates: | ||
| ===== - Searching for Life ===== | ===== - Searching for Life ===== | ||
| - | **Juno:** To search for life on a planet, first we must detect its atmosphere. If certain molecules are present in the atmosphere, then we can assume life may exist there. These molecules are called biosignatures. For example, without O$_2$ and O$_3$ in Earth’s atmosphere, advanced life like ours could not exist. Besides these two, water vapor, methane, nitrous oxide, and methyl chloride are also considered biosignatures. Six years ago, in 2019, water vapor was detected in the atmosphere of K2-18b, an Earth-like planet within the habitable zone. | ||
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| - | **Juno:** They are detected through spectroscopy, | ||
| - | **Socrates: | ||
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| - | **Juno:** That is the most important. If a star’s light passes through a gas cloud before reaching us, then that cloud absorbs light at exactly those wavelengths it would have emitted. So in the star’s spectrum, light is missing at those precise wavelengths, | ||
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| - | **Juno:** Since we’re close to the Padma, let’s not drag this out. I hope you’ve guessed already where the gas cloud is. Still, let me show you in the figure above. During a transit, when a planet passes in front of its parent star along our line of sight, the star’s light dims slightly. But part of that light must then pass through the planet’s atmosphere before reaching us. The gas cloud mentioned earlier is this very atmosphere. That means the absorption lines we see in the star’s spectrum are actually imprints of the molecules in the planet’s atmosphere. The star’s spectrum thus becomes the fingerprint of the planet’s atmosphere. Such spectra are called transmission spectra. | ||
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| - | **Socrates: | ||
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| - | **Juno:** I sometimes feel the same. By now, atmospheres of many planets have been detected, but no Earth-like planet’s atmosphere has yet shown all biosignatures. If found, its spectrum would look like what you see in the figure above—from oxygen and ozone lines near 0.3 microns all the way to carbon dioxide lines at 16 microns in the infrared. Notice the lines are broad, not narrow. Because of molecular motion and the Doppler shifts associated with it, every absorption line broadens. In the transmission spectrum of an Earth-like planet, you would also see water and methane. Unless all of these are found together, we cannot give definitive proof of life on any planet. | ||
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